List of publications for Department of Environmental Science

The list displays all publications which have a staff member at Department of Environmental Science as co-author. The list includes the period before the department was established in 2011 - i.e. when staff members were employed at the former Danish National Environmental Research Institute.

By default the list is grouped according to year of publication, and sorted by author within years. The sorting may be changed to a certain extent.

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Jacobsen, C. S. (2003). Slutrapport BIOPRO - Center for biologiske processer i forurenet jord og Sediment: Det strategiske Miljøforskningsprogram 1998 - 2002. Danmarks og Grønlands Geologiske Undersøgelse.

Jacobsen, C. S., Brinch, U. C., Juhler, R., Jacobsen, O. S., Rosenberg, P., van de Keur, P., Nygaard, E., Barlebo, H. C., Vosgerau, H., Iversen, B. V., Vinther, F., Elsgaard, L., Olesen, S. E., Torp, S., Greve, M. & Jacobsen, O. H. (2003). Mapping of areas sensitive to pesticide leaching in sandy parts of Denmark. In DJF rapport nr. 89 (Vol. 89, pp. 169-179). DJF Rapport.

Jacobsen, C. S. (2002). Den biologiske aktivitet i forurenede jorde og kystsediment. Miljøforskning.

Jacobsen, C. S. (2001). Undersøgelse af bakterielle kimtal i Grønlands indlandsis. Danmarks og Grønlands Geologiske Undersøgelse.

Jacobsen, C. S., Andersen, S. M., Mortensen, H. S., Bossi, R. & Streibig, J. C. (2000). Nedbrydning af lavdosis- herbicider i danske jorde. Naturens Verden, – særnummer om pesticider. Feb. 2000.

Jacobsen, C. S. (1999). Den biologiske aktivitet i forurenede jorde og kystsediment. Miljøforskning.

Jacobsen, C. S., Lindhardt, B. & Brüsch, W. (1998). Vurdering af risikoen for udvaskning af pesticider fra befæstede arealer. Danmarks og Grønlands Geologiske Undersøgelse.

Jacobsen, C. S., Nielsen, T. K. & Bælum, J. (2012). DNA sorption blocker “G2” increase DNA recovery from subsoil clay sediment >1.000 times. Poster session presented at International Society of Microbial Ecology , Copenhagen, Denmark.

Jacobsen, C. S. & Holben, W. E. (2005). Quantification of Salmonella sp. invA mRNA in soil and chicken manure using magnetic capture hybridization RT-PCR. Poster session presented at BAGECO 08, Lyon.

Jacobsen, C. S., Hestbjerg, H., Krogh, P. H. & Ekelund, F. (2001). Field application of commercial mushroom refuse containing biodegrading Pleurotus ostreatus: Populations dynamics of bacteria, protozoa, fungi, springtail & mites. Poster session presented at SETAC Europe 2001, Copenhagen , Denmark.

Jacobsen, C. S. & Naesbye, M. (1998). Short peptide nucleic acids (PNA) in sequence specific purification of DNA from soil and groundwater sediment. Poster session presented at International Symposium on Microbial Ecology (ISME-8), Halifax, Canada.

Jacobsen, C. S. & Naesby, M. (1997). Use of short peptide nucleic acids in sequence specific purification of DNA from soil and groundwater sediment. Poster session presented at MAREP International Conference on Marker/Reporter Genes in Microbial Ecology, Stockholm, Sweden.

Jacobsen, C. S., Jørgensen, A. & Sørensen, J. (1996). Molecular analysis of all culturable fluorescent pseudomonads in selected microniches of the rhizosphere using REP-PCR. Poster session presented at International Symposium on Bacterial Genetics and Ecology (BAGECO 5), Nafplion, Greece.

Jacobsen, C. S. (1994). Magnetic capture hybridization - detection of DNA in small scale soil samples. Poster session presented at New Approaches in Microbial Ecology (NAME), Elsinore, Denmark.

Jacobsen, C. S., Brinch, U., Jørgensen, C., Aamand, J. & Jensen, B. (1994). Growth in soil of Tn5-lux modified phenanthrene degrading Pseudomonas sp. Poster session presented at New Approaches in Microbial Ecology (NAME), Elsinore, Denmark.

Jacobsen, C. S. (1992). Use of selective plating, immunofluorescence microscopy and DNA hybridiza¬tion to assess the fate of Alcaligenes eutrophus AEO106(pRO101) in soil during water stress. Poster session presented at International Symposium on Microbial Ecology, Barcelona, Spain.

Jacobsen, C. S. (1996). Detection and quantification of microbial DNA sequences in soil by southern- and dot/slot blot hybridization. In Molecular Microbial Ecology Manual (1st Ed ed., pp. 2.4.2:1-11). Kluwer Academic Publishers (Springer).

Jacobsen, C. S. (1996). Detection of microbial genes from the rhizosphere by magnetic capture hybridization and subsequent amplification of target genes by PCR. In Molecular Microbial Ecology Manual (pp. 1.4.1:1-8). Kluwer Academic Publishers.

Jacobsen, C. S. & Pedersen, J. C. (1992). Growth, activity and genetic stability of 2,4-D degrading bacteria in natural soils. In Soil Decontamination Using Biological Processes (pp. 83-90)

Jacobsen, C. S., Bech, T. B., Amin, M., Garcia, R., Bælum, J., Fredslund, L., Kjaer, J., Forslund, A., Popovic, O., Bui, T. X., Bang, D. D., Lægdsmand, M., Jensen, L. S., Santorum, P. & Dalsgaard, A. (2009). Leaching of pathogens from manure to drainage water – assayed using classic and DNA/mRNA based methods. Poster session presented at BioMicroWorld, Lisabon, Portugal.

Jacobsen, C. S., Feld, L., Hjelmsø, M. H., Nielsen, M. S., Rønn, R., Ekelund, F., Johnsen, A., Sørensen, J. G. & Krogh, P. H. (2016). GENEPEASE Genomic tools for assessment of pesticide effects on the agricultural soil ecosystem. (pp. 1-53). Bekæmpelsesmiddelforskning fra Miljøstyrelsen.

Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S. ... Baelum, J. (2018). Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples. Scientific Reports, 8(1), Article 5711. https://doi.org/10.1038/s41598-018-24082-y

Jacobsen, C. S. (2018). NoNewBAM – er jordherbicidet diflufenican en trussel for grundvandet ved anvendelse på udyrkede urbane arealer? In Nyt om pesticider - undersøgelser og afværge ATV Jord og Grundvand. http://www.atv-jord-grundvand.dk/Afholdte_moeder/20180620_moede28/Abstractsaml%2028.pdf

Jacobsen, C. S., Bælum, J. & Broholm, M. (2010). Mikrobiel dechlorering af TCE - molekylære teknikker til bestemmelse af tilstedeværelse og aktivitet af specifikke nedbrydere. In Naturlig og stimuleret biologisk nedbrydning (pp. 31-38). ATV Jord og Grundvand.

Jacobsen, C. S., de Lipthay, J. R., Bender, M., Fredslund, L., Johnsen, A. R. & Johnsen, K. (2004). Direct analysis of microbial populations in soil and freshwater aquifers using nucleic acid based techniques. In Geological Survey of Denmark and Greenland Bulletin 4 (pp. 33-36). GEUS. http://www.eng.geus.dk/media/12498/nr4_p33-36.pdf

Jacquez, G., Sabel, C. E. & Shi, C. (2015). Genetic GIScience: Towards a place-based synthesis of the genome, exposome and behavome. Annals of the Association of American Geographers, 105(3), 454-472.

Jacquiod, S. J. A., Stenbæk, J., Santos, S., Winding, A., Sørensen, S. J. & Priemé, A. (2016). Metagenomes provide valuable comparative information on soil microeukaryotes. Research in Microbiology, 167(5), 436-450. Article 167. https://doi.org/10.1016/j.resmic.2016.03.003

Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, P. E., Johansen, A., Brandt, K. K., Priemé, A. & Sørensen, S. J. (2018). Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages. Microbiome, 6(1), Article 223. https://doi.org/10.1186/s40168-018-0606-1

Jaeger, A. & Henrichs, T. (2008). Modelling environmental change in Europe: towards a model inventory (SEIS/Forward). Publications Office. http://reports.eea.europa.eu/technical_report_2008_11/en/modelling_environmental_change_in_europe.pdf

Jahnke, A., McLachlan, M. S. & Mayer, P. (2008). Equlibrium sampling: Partitioning of organochlorine compounds from lipids into polydimethylsiloxane. Chemosphere, 73(10), 1575-1581. https://doi.org/10.1016/j.chemosphere.2008.09.017

Jahnke, A., Mayer, P., Broman, D. & McLachlan, M. S. (2009). Possibilities and limitations of equilibrium sampling using polydimethylsiloxane in fish tissue. Chemosphere, 77(6), 764-770. https://doi.org/10.1016/j.chemosphere.2009.08.025

Jahnke, A. & Mayer, P. (2010). Do complex matrices modify the sorptive properties of polydimethylsiloxane (PDMS) for non-polar organic chemicals? Journal of Chromatography A, 1217(29), 4765-4770. https://doi.org/10.1016/j.chroma.2010.05.046

Jahnke, A., Mayer, P., Adolfsson-Erici, M. & McLachlan, M. S. (2011). Equilibrium sampling of environmental pollutants in fish: Comparison with lipid- normalized concentrations and homogenization effects on chemical activity. Environmental Toxicology and Chemistry, 30(7), 1515-1521. https://doi.org/10.1002/etc.534

Jahnke, A., Mayer, P. & McLachlan, M. S. (2012). Sensitive Equilibrium Sampling To Study Polychlorinated Biphenyl Disposition in Baltic Sea Sediment. Environmental Science & Technology, 46(18), 10114−10122. https://doi.org/10.1021/es302330v

Jahnke, A., Mayer, P., McLachlan, M. S., Wickström, H., Gilbert, D. & Macleod, M. (2014). Silicone passive equilibrium samplers as 'chemometers' in eels and sediments of a Swedish lake. Environmental Science: Processes and Impacts, 16, 464-472. https://doi.org/10.1039/c3em00589e

Jakobsen, M. & Nielsen, H. Ø. (2014). Forvaltningens samspil med borgere og virksomheder. In J. Blom-Hansen, P. M. Christiansen, T. Pallesen & S. Serritzlew (Eds.), Offentlig forvaltning : et politologisk perspektiv (pp. 325-351). Hans Reitzels Forlag.

Jakobsen, L., Hansen, L. H., Sandvang, D., Sørensen, S. J., Frimodt-Møller, N. & Hammerum, A. M. (2005). Effect of Antibiotics in Sub-Lethal Levels on Conjugation Frequency between Escherichia coli Strains. Poster session presented at First Conference on New Frontiers in Microbiology and Infection, Villars-sur-Ollons, Switzerland.

Jakobsen, T. H., Hansen, A., Kerpedjiev, P., Hansen, M., Hansen, L. H., Jensen, P. O., Hansen, C. R., Qvortrup, K., Givskov, M., Burmølle, M., Sørensen, S. J., Hoiby, N. & Bjarnsholt, T. (2010). Complete genome sequence of the CF pathogen Achromobacter Xylocoxidans and in vitro biofilm formation. Poster session presented at The 24th Annual North American Cystic Fibrose Conference, Baltimore, United States.

Jakobsen, R. R., Haahr, T., Humaidan, P., Jensen, J. S., Kot, W. P., Castro-Mejia, J. L., Deng, L., Leser, T. D. & Nielsen, D. S. (2020). Characterization of the vaginal DNA virome in health and dysbiosis. Viruses, 12(10), Article 1143. https://doi.org/10.3390/v12101143

Jakobsen, M. & Nielsen, H. O. (2024). Forvaltningens samspil med borgere og virksomheder. In Offentlig forvaltning: et politologisk perspektiv (3 ed., pp. 373-402). Hans Reitzels Forlag.

Jakobsen, M. L., Gregersen, D. S., Gøtzsche-Astrup, O. & Nielsen, H. O. (2026). Internal climate leadership in municipal organizations. How paradoxical and transformational leadership of higher-level management shape climate leadership of lower-level managers. Environmental Politics, 35(4), 771-791. https://doi.org/10.1080/09644016.2025.2520659

Jakobsen, M. L., Nielsen, H. O., Gøtzsche-Astrup, O. & Gregersen, D. S. (2025, Nov 5). Internal city climate leadership: Creating meaning from dilemmas (blog). https://environmentalpoliticsjournal.net/guest-posts/internal-city-climate-leadership-creating-meaning-from-dilemmas/

Jamal, R. B., Vitasovic, T., Gosewinkel, U. & Ferapontova, E. E. (2023). Detection of E.coli 23S rRNA by electrocatalytic “off-on” DNA beacon assay with femtomolar sensitivity. Biosensors and Bioelectronics, 228, Article 115214. https://doi.org/10.1016/j.bios.2023.115214

Jamal, R. B., Bay Gosewinkel, U. & Ferapontova, E. E. (2024). Electrocatalytic aptasensor for bacterial detection exploiting ferricyanide reduction by methylene blue on mixed PEG/aptamer monolayers. Bioelectrochemistry, 156, Article 108620. https://doi.org/10.1016/j.bioelechem.2023.108620

Janechek, N. J., Hansen, K. M. & Stanier, C. O. (2017). Comprehensive atmospheric modeling of reactive cyclic siloxanes and their oxidation products. Atmospheric Chemistry and Physics, 17(13), 8357-8370. https://doi.org/10.5194/acp-17-8357-2017

Jang, J., Hendriksen, N. B. & Jakobsen, H. (2016). Using flow cytometry for the analysis of airborne bacteria in environmental samples collected from a municipal wastewater treatment plant in Denmark. In Danish Microbiological Society Congress

Jang, J., Hendriksen, N. B. & Jakobsen, H. (2017). Using a high sensitivity flow cytometer and quantitative PCR for the enumeration of bacterial cells in environmental samples. In Nordic Flow Cytometry Meeting

Jang, J., Hendriksen, N. B. & Jakobsen, H. (2017). Characterization of airborne bacteria collected from a municipal wastewater treatment plant in Roskilde by flow cytometric analysis.

Jang, J. & Hendriksen, N. B. (2017). Comparison of different combinations of filters and DNA extraction method for quantitative airborne bacteria analysis. In Danish Microbiological Society Congress

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